Melanoma data analysis:

This work is inspired by this website.

Here, I am adapting several codes in to one notebook to do gene expression analysis- I mainly use Jupyter Notebook but also include some extra codes as stated throughout the codes. The pipline has been divided into seperate steps clrealy marked as step I , II , etc. I have alos included one notebook for the merged pipline (mrged_notebook) that could be easily implemented and used for the entire analysis.

You can use the tcga.R file to download necessary data for your prohject.